Automatic polyp detection in colonoscopy videos

Zijie Yuan; Mohammadhassan IzadyYazdanabadi; Divya Mokkapati; Rujuta Panvalkar; Jae Y. Shin; Nima Tajbakhsh; Suryakanth Gurudu; Jianming Liang

doi:10.1117/12.2254671

24 February 2017 Automatic polyp detection in colonoscopy videos

Zijie Yuan, Mohammadhassan IzadyYazdanabadi, Divya Mokkapati, Rujuta Panvalkar, Jae Y. Shin, Nima Tajbakhsh, Suryakanth Gurudu, Jianming Liang

Author Affiliations +

Proceedings Volume 10133, Medical Imaging 2017: Image Processing; 101332K (2017) https://doi.org/10.1117/12.2254671
Event: SPIE Medical Imaging, 2017, Orlando, Florida, United States

Abstract

Colon cancer is the second cancer killer in the US [1]. Colonoscopy is the primary method for screening and prevention of colon cancer, but during colonoscopy, a significant number (25% [2]) of polyps (precancerous abnormal growths inside of the colon) are missed; therefore, the goal of our research is to reduce the polyp miss-rate of colonoscopy. This paper presents a method to detect polyp automatically in a colonoscopy video. Our system has two stages: Candidate generation and candidate classification. In candidate generation (stage 1), we chose 3,463 frames (including 1,718 with-polyp frames) from real-time colonoscopy video database. We first applied processing procedures, namely intensity adjustment, edge detection and morphology operations, as pre-preparation. We extracted each connected component (edge contour) as one candidate patch from the pre-processed image. With the help of ground truth (GT) images, 2 constraints were implemented on each candidate patch, dividing and saving them into polyp group and non-polyp group. In candidate classification (stage 2), we trained and tested convolutional neural networks (CNNs) with AlexNet architecture [3] to classify each candidate into with-polyp or non-polyp class. Each with-polyp patch was processed by rotation, translation and scaling for invariant to get a much robust CNNs system. We applied leave-2-patients-out cross-validation on this model (4 of 6 cases were chosen as training set and the rest 2 were as testing set). The system accuracy and sensitivity are 91.47% and 91.76%, respectively.

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Zijie Yuan, Mohammadhassan IzadyYazdanabadi, Divya Mokkapati, Rujuta Panvalkar, Jae Y. Shin, Nima Tajbakhsh, Suryakanth Gurudu, and Jianming Liang "Automatic polyp detection in colonoscopy videos", Proc. SPIE 10133, Medical Imaging 2017: Image Processing, 101332K (24 February 2017); https://doi.org/10.1117/12.2254671

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