Unsupervised pathology image segmentation using representation learning with spherical k-means

Takayasu Moriya; Holger R. Roth; Shota Nakamura; Hirohisa Oda; Kai Nagara; Masahiro Oda; Kensaku Mori

doi:10.1117/12.2292172

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6 March 2018 Unsupervised pathology image segmentation using representation learning with spherical k-means

Takayasu Moriya, Holger R. Roth, Shota Nakamura, Hirohisa Oda, Kai Nagara, Masahiro Oda, Kensaku Mori

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Proceedings Volume 10581, Medical Imaging 2018: Digital Pathology; 1058111 (2018) https://doi.org/10.1117/12.2292172
Event: SPIE Medical Imaging, 2018, Houston, Texas, United States

Abstract

This paper presents a novel method for unsupervised segmentation of pathology images. Staging of lung cancer is a major factor of prognosis. Measuring the maximum dimensions of the invasive component in a pathology images is an essential task. Therefore, image segmentation methods for visualizing the extent of invasive and noninvasive components on pathology images could support pathological examination. However, it is challenging for most of the recent segmentation methods that rely on supervised learning to cope with unlabeled pathology images. In this paper, we propose a unified approach to unsupervised representation learning and clustering for pathology image segmentation. Our method consists of two phases. In the first phase, we learn feature representations of training patches from a target image using the spherical k-means. The purpose of this phase is to obtain cluster centroids which could be used as filters for feature extraction. In the second phase, we apply conventional k-means to the representations extracted by the centroids and then project cluster labels to the target images. We evaluated our methods on pathology images of lung cancer specimen. Our experiments showed that the proposed method outperforms traditional k-means segmentation and the multithreshold Otsu method both quantitatively and qualitatively with an improved normalized mutual information (NMI) score of 0.626 compared to 0.168 and 0.167, respectively. Furthermore, we found that the centroids can be applied to the segmentation of other slices from the same sample.

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Takayasu Moriya, Holger R. Roth, Shota Nakamura, Hirohisa Oda, Kai Nagara, Masahiro Oda, and Kensaku Mori "Unsupervised pathology image segmentation using representation learning with spherical k-means", Proc. SPIE 10581, Medical Imaging 2018: Digital Pathology, 1058111 (6 March 2018); https://doi.org/10.1117/12.2292172

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