Journal of Biomedical Optics
VOL. 17 · NO. 11 | November 2012
CONTENTS
JBO Letters
Chuanmao Fan, Gang Yao
Journal of Biomedical Optics, Vol. 17, Issue 11, 110501, (October 2012) https://doi.org/10.1117/1.JBO.17.11.110501
Open Access
TOPICS: Optical coherence tomography, Algorithm development, Biomedical optics, Iterative methods, Polarization, Wave plates, Fluctuations and noise, Jones matrices, Imaging systems, Ophthalmology
Hyungsik Lim, John Danias
Journal of Biomedical Optics, Vol. 17, Issue 11, 110502, (October 2012) https://doi.org/10.1117/1.JBO.17.11.110502
Open Access
TOPICS: Second-harmonic generation, Nerve, Optical fibers, Axons, Retina, Visualization, Birefringence, Optical coherence tomography, Reflectivity, Optic nerve
Janggun Jo, Hongyu Zhang, Paul Cheney, Xinmai Yang
Journal of Biomedical Optics, Vol. 17, Issue 11, 110503, (October 2012) https://doi.org/10.1117/1.JBO.17.11.110503
Open Access
TOPICS: Brain, Signal detection, Neuroimaging, Photoacoustic spectroscopy, Magnetic resonance imaging, Ultrasonography, Sensors, Photoacoustic imaging, Brain activation, Head
Xosé Luis Deán-Ben, Vasilis Ntziachristos, Daniel Razansky
Journal of Biomedical Optics, Vol. 17, Issue 11, 110504, (October 2012) https://doi.org/10.1117/1.JBO.17.11.110504
Open Access
TOPICS: Acoustics, Tomography, Scattering, Reconstruction algorithms, Sensors, Signal detection, Tissue optics, Wave propagation, Signal generators, Ultrasonics
Journal of Biomedical Optics, Vol. 17, Issue 11, 110505, (November 2012) https://doi.org/10.1117/1.JBO.17.11.110505
Open Access
TOPICS: Tissues, Optical coherence tomography, Acoustics, Elastography, Coherence (optics), Tissue optics, Modulation, Arteries, 3D image processing, Ultrasonics
Journal of Biomedical Optics, Vol. 17, Issue 11, 110506, (November 2012) https://doi.org/10.1117/1.JBO.17.11.110506
Open Access
TOPICS: Skull, Acquisition tracking and pointing, Brain, Photoacoustic tomography, Ultrasonography, Neuroimaging, Signal to noise ratio, Brain imaging, Light scattering, Photoacoustic spectroscopy
Joseph Jing, Jun Zhang, Anthony Chin Loy, Brian Wong M.D., Zhongping Chen
Journal of Biomedical Optics, Vol. 17, Issue 11, 110507, (November 2012) https://doi.org/10.1117/1.JBO.17.11.110507
Open Access
TOPICS: Optical coherence tomography, Imaging systems, Magnetic resonance imaging, Computed tomography, 3D image processing, 3D modeling, In vivo imaging, Tissues, Range imaging, Bragg cells
Review Papers
Tom Lister, Philip Wright, Paul Chappell
Journal of Biomedical Optics, Vol. 17, Issue 11, 110901, (November 2012) https://doi.org/10.1117/1.JBO.17.11.110901
Open Access
TOPICS: Skin, Monte Carlo methods, Scattering, Absorption, Optical simulations, Laser therapeutics, Diffusion, Reflectivity, Blood, Color prediction
Research Papers: General
Andrew Radosevich, Jeremy Rogers, Ilker Capoglu, Nikhil Mutyal, Prabhakar Pradhan, Vadim Backman
Journal of Biomedical Optics, Vol. 17, Issue 11, 115001, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115001
Open Access
TOPICS: Scattering, Monte Carlo methods, Birefringence, Polarization, Backscatter, Mie scattering, Photon transport, Refractive index, Rayleigh scattering, Open source software
Journal of Biomedical Optics, Vol. 17, Issue 11, 115002, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115002
Open Access
TOPICS: Refractive index, Water, Absorption, Ultraviolet radiation, Blood, Biomedical optics, Glucose, Sodium, Visible radiation, Optical properties
Hao Shan, Yanmei Liang, Jingyi Wang, Yan Li
Journal of Biomedical Optics, Vol. 17, Issue 11, 115003, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115003
Open Access
TOPICS: Skin, Optical clearing, Optical coherence tomography, Liquids, Tissue optics, Tissues, Natural surfaces, In vitro testing, Biomedical optics, Interfaces
Andrea Monteiro, Maria A. Jardini, Viviana Giampaoli, Sarah Alves, Antonio Figueiredo Neto, Magnus Gidlund
Journal of Biomedical Optics, Vol. 17, Issue 11, 115004, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115004
Open Access
TOPICS: Plasma, Surface plasmons, Blood, Particles, Teeth, Inflammation, Statistical analysis, Biomedical optics, Magnesium, Pathogens
Jan Schlothauer, Steffen Hackbarth, Lutz Jäger, Kai Drobniewski, Hemantbhai Patel, Sergiu Gorun, Beate Röder
Journal of Biomedical Optics, Vol. 17, Issue 11, 115005, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115005
Open Access
TOPICS: Luminescence, Oxygen, Picosecond phenomena, Skin, Photodynamic therapy, Ear, Microscopy, In vivo imaging, Diffusion, Phosphorescence
Arindam Roy, Rajagopal Ramasubramaniam, Harshavardhan Gaonkar
Journal of Biomedical Optics, Vol. 17, Issue 11, 115006, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115006
Open Access
TOPICS: Reflectivity, Tissues, Scattering, Absorption, Radiative transfer, Laser scattering, Inverse optics, Transmittance, Tissue optics, Collimation
Filippo Piffaretti, Anna Maria Novello, Rajendran Senthil Kumar, Eddy Forte, Cédric Paulou, Patrycja Nowak-Sliwinska, Hubert van den Bergh, Georges Wagnières
Journal of Biomedical Optics, Vol. 17, Issue 11, 115007, (November 2012) https://doi.org/10.1117/1.JBO.17.11.115007
Open Access
TOPICS: Photodynamic therapy, Oxygen, Content addressable memory, Luminescence, Picosecond phenomena, In vivo imaging, Tissues, Blood vessels, Tissue optics, Phosphorescence
Research Papers: Imaging
Journal of Biomedical Optics, Vol. 17, Issue 11, 116001, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116001
Open Access
TOPICS: Polarization, Tissues, Tumors, Luminescence, Microscopy, Cancer, Optical sensors, Sensors, Microscopes, Near infrared
Maria Cekanova, Md. Jashim Uddin, Alfred Legendre D.V.M., Gina Galyon, Joseph Bartges, Amanda Callens, Tomas Martin-Jimenez, Lawrence Marnett
Journal of Biomedical Optics, Vol. 17, Issue 11, 116002, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116002
Open Access
TOPICS: Magnesium, Safety, Tumors, Plasma, Blood, Endoscopy, Cancer, Tissues, Optical imaging, Toxicity
Yang Sun, Hongtao Xie, Jing Liu, Matthew Lam, Abhijit Chaudhari, Feifei Zhou, Julien Bec, Diego Yankelevich, Allison Dobbie, Steven Tinling, Regina Gandour-Edwards, Wayne Monsky, Gregory Farwell, Laura Marcu
Journal of Biomedical Optics, Vol. 17, Issue 11, 116003, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116003
Open Access
TOPICS: Tissues, Luminescence, Tumors, Collagen, In vivo imaging, Time resolved spectroscopy, Ultrasonics, Ultrasonography, Tissue optics, Transducers
Journal of Biomedical Optics, Vol. 17, Issue 11, 116004, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116004
Open Access
TOPICS: Image segmentation, Optical coherence tomography, Tissues, Algorithm development, Image filtering, Detection and tracking algorithms, Toxicity, Image processing algorithms and systems, Natural surfaces, Biopsy
Seyed Hossein Rasta, Ayyakkannu Manivannan, Peter Sharp
Journal of Biomedical Optics, Vol. 17, Issue 11, 116005, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116005
Open Access
TOPICS: Oxygen, Retina, Eye, Scanning laser ophthalmoscopy, Confocal microscopy, Veins, Arteries, Imaging spectroscopy, Light scattering, Image processing
Huajiang Wei, Guoyong Wu, Zhouyi Guo, Hongqin Yang, Yonghong He, Shusen Xie, Xiao Guo
Journal of Biomedical Optics, Vol. 17, Issue 11, 116006, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116006
Open Access
TOPICS: Tissues, Glucose, Lung, Optical coherence tomography, Ultrasonography, Lung cancer, Diffusion, In vitro testing, Surface plasmons, Scattering
Jyh-Hong Lee, Ming-Rung Tsai, Chi-Kuang Sun, Bor-Luen Chiang
Journal of Biomedical Optics, Vol. 17, Issue 11, 116007, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116007
Open Access
TOPICS: Skin, Liquid crystals, In vivo imaging, Second-harmonic generation, Microscopy, Lymphatic system, FDA class II medical device development, Video, Molecules, Nonlinear optics
Fei Wang, Guohua Shi, Xiqi Li, Jing Lu, Zhihua Ding, Xinghuai Sun, Chunhui Jiang, Yudong Zhang
Journal of Biomedical Optics, Vol. 17, Issue 11, 116008, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116008
Open Access
TOPICS: Image segmentation, Optical coherence tomography, Eye, Biomedical optics, Adaptive optics, Light sources, Control systems, Statistical analysis, Visualization, Signal to noise ratio
Shahab Chitchian, Markus Mayer, Adam Boretsky, Frederik van Kuijk, Massoud Motamedi
Journal of Biomedical Optics, Vol. 17, Issue 11, 116009, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116009
Open Access
TOPICS: Denoising, Optical coherence tomography, Image enhancement, Wavelet transforms, Image quality, Signal to noise ratio, Wavelets, Eye, Speckle, Retina
Rahul Yadav, Ranjini Kottaiyan, Kamran Ahmad, Geun-Young Yoon
Journal of Biomedical Optics, Vol. 17, Issue 11, 116010, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116010
Open Access
TOPICS: Optical coherence tomography, Cornea, Light scattering, Monochromatic aberrations, Visualization, In vivo imaging, Interfaces, Eye, Optical resolution, Cones
Rabah Mouras, Pierre Bagnaninchi, Andrew Downes, Alistair Elfick
Journal of Biomedical Optics, Vol. 17, Issue 11, 116011, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116011
Open Access
TOPICS: Second-harmonic generation, Collagen, Stem cells, Microscopy, Multiphoton microscopy, CARS tomography, Luminescence, In vitro testing, Signal processing, Bandpass filters
Aliz Kunstar, Jeroen Leijten, Stefan van Leuveren, Janneke Hilderink, Cornelis Otto, Clemens van Blitterswijk, Marcel Karperien, Aart van Apeldoorn
Journal of Biomedical Optics, Vol. 17, Issue 11, 116012, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116012
Open Access
TOPICS: Raman spectroscopy, Cartilage, Bone, Tissues, Principal component analysis, Imaging spectroscopy, Visualization, Collagen, Data analysis, Fetus
Jayakrupakar Nallala, Cyril Gobinet, Marie Danielle Diebold, Valerie Untereiner, Olivier Bouché, Michel Manfait, Ganesh Sockalingum, Olivier Piot
Journal of Biomedical Optics, Vol. 17, Issue 11, 116013, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116013
Open Access
TOPICS: Tissues, Infrared imaging, Tumors, Colon, Imaging spectroscopy, Infrared radiation, Principal component analysis, Proteins, Colorectal cancer, Cancer
Tyler Drake, Michael DeSoto, Jennifer Peters, Marcus Henderson, Bonnie Thiele, Tammy Sinclair Bishop, Amy Murtha, David Katz, Adam Wax
Journal of Biomedical Optics, Vol. 17, Issue 11, 116014, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116014
Open Access
TOPICS: Coating, In vivo imaging, Optical imaging, Tissues, Endoscopes, Natural surfaces, Luminescence, Imaging systems, Vagina, Interferometry
Alex Walsh, Kristin Poole, Craig Duvall, Melissa Skala
Journal of Biomedical Optics, Vol. 17, Issue 11, 116015, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116015
Open Access
TOPICS: In vivo imaging, Tissue optics, Tissues, Luminescence, Biopsy, Optical testing, Biomedical optics, Mode conditioning cables, Cell death, Optical imaging
Journal of Biomedical Optics, Vol. 17, Issue 11, 116016, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116016
Open Access
TOPICS: Ultrasonics, Transducers, Acoustics, In vivo imaging, Deconvolution, Photoacoustic microscopy, Imaging systems, Photoacoustic spectroscopy, Tissue optics, Image resolution
Samata Kakkad, Meiyappan Solaiyappan, Pedram Argani, Saraswati Sukumar, Lisa Jacobs, Dieter Leibfritz, Zaver Bhujwalla, Kristine Glunde
Journal of Biomedical Optics, Vol. 17, Issue 11, 116017, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116017
Open Access
TOPICS: Tumors, Lymphatic system, Breast, Second-harmonic generation, Breast cancer, Tissues, Biopsy, Collagen, Microscopy, Fourier transforms
Lin An, Murray Johnstone, Ruikang Wang
Journal of Biomedical Optics, Vol. 17, Issue 11, 116018, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116018
Open Access
TOPICS: Blood circulation, Imaging systems, Tissues, Optic nerve, Tissue optics, Optical coherence tomography, 3D image processing, Capillaries, Head, Biomedical optics
Journal of Biomedical Optics, Vol. 17, Issue 11, 116019, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116019
Open Access
TOPICS: Acoustics, Transducers, Optical fibers, Ultrasonography, Photoacoustic tomography, Ultrasonics, Signal attenuation, Data acquisition, Acquisition tracking and pointing, Electronics
Fenghua Tian, F. Andrew Kozel M.D., Amarnath Yennu, Paul Croarkin, Shawn McClintock, Kimberly Mapes, Mustafa Husain, Hanli Liu
Journal of Biomedical Optics, Vol. 17, Issue 11, 116020, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116020
Open Access
TOPICS: Brain, Reliability, Magnetism, Hemodynamics, Prefrontal cortex, Cortical activation, Neuroimaging, Spherical lenses, Head, Data analysis
Journal of Biomedical Optics, Vol. 17, Issue 11, 116021, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116021
Open Access
TOPICS: Tissues, Raman spectroscopy, Brain, Cancer, Tumors, Brain cancer, Spectroscopy, Biological research, Acoustics, Statistical analysis
Ronni Wessels, Daniel de Bruin, Dirk Faber, Hester van Boven, Andrew Vincent, Ton van Leeuwen, Marc van Beurden, Theo Ruers M.D.
Journal of Biomedical Optics, Vol. 17, Issue 11, 116022, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116022
Open Access
TOPICS: Optical coherence tomography, Tissues, Signal attenuation, Tissue optics, Biopsy, Skin, Cancer, Pathology, Statistical analysis, Light scattering
Viera Crosignani, Alexander Dvornikov, Jose Aguilar, Chiara Stringari, Robert Edwards, William Mantulin, Enrico Gratton
Journal of Biomedical Optics, Vol. 17, Issue 11, 116023, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116023
Open Access
TOPICS: Luminescence, Photons, In vivo imaging, Tissues, Tissue optics, Colon, Sensors, Stem cells, Intestine, Microscopes
Oleg Nadiarnykh, Giju Thomas, Johan van Voskuilen, Henricus Sterenborg, Hans Gerritsen
Journal of Biomedical Optics, Vol. 17, Issue 11, 116024, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116024
Open Access
TOPICS: Absorption, In vivo imaging, Luminescence, Tissues, Nonlinear optics, Multiphoton microscopy, Femtosecond phenomena, Ultraviolet radiation, Photons, Harmonic generation
Kinshuk Mitra, James Melvin, Shufang Chang, Ronald Xu, Kyoungjin Park, Alper Yilmaz, Scott Melvin M.D.
Journal of Biomedical Optics, Vol. 17, Issue 11, 116025, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116025
Open Access
TOPICS: Luminescence, Tissues, Hyperspectral imaging, Image segmentation, Injuries, Gallbladder, Surgery, Image processing, Imaging systems, Tissue optics
Chia-Wei Sun, Yao-Sheng Hsieh, Yi-Ching Ho, Cho-Pei Jiang, Ching-Cheng Chuang, Shyh-Yuan Lee D.D.S.
Journal of Biomedical Optics, Vol. 17, Issue 11, 116026, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116026
Open Access
TOPICS: Teeth, Polarization, Optical testing, Mueller matrices, Polarimetry, Glasses, Transmittance, Biomedical optics, Interfaces, Scanning electron microscopy
Filippo Piffaretti, Jean-Pierre Ballini, Roberto Perotti, Matthieu Zellweger, Edoardo Vezzola, Michel Sickenberg, Georges Wagnières
Journal of Biomedical Optics, Vol. 17, Issue 11, 116027, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116027
Open Access
TOPICS: Reflectivity, Retina, Laser therapeutics, Eye, Laser tissue interaction, Tissues, Absorption, Optical filters, Infrared imaging, Pathology
Tim Holmes, Alessandro Invernizzi, Sean Larkin, Giovanni Staurenghi M.D.
Journal of Biomedical Optics, Vol. 17, Issue 11, 116028, (November 2012) https://doi.org/10.1117/1.JBO.17.11.116028
Open Access
TOPICS: Optical coherence tomography, Indocyanine green, Angiography, Arteries, Eye, Blood, Tissues, Veins, Mathematical modeling, Capillaries
Research Papers: Sensing
Thomas Allsop, Ranjeet Bhamber, Glynn Lloyd, Martin Miller, Andrew Dixon, David Webb, Juan Ania-Castañon, Ian Bennion
Journal of Biomedical Optics, Vol. 17, Issue 11, 117001, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117001
Open Access
TOPICS: Sensors, Fiber Bragg gratings, Fiber optics, Sensing systems, Error analysis, Fiber optics sensors, Calibration, Silicon, Spine, Reconstruction algorithms
Pen-Li Lu, Shu-Shen Hsu, Meng-Li Tsai, Fu-Shan Jaw, An-Bang Wang, Chen-Tung Yen
Journal of Biomedical Optics, Vol. 17, Issue 11, 117002, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117002
Open Access
TOPICS: Gas lasers, Temperature metrology, Skin, Carbon monoxide, Pulsed laser operation, Infrared cameras, Data modeling, Finite element methods, Infrared lasers, Absorption
Alexander Caicedo, Gunnar Naulaers, Petra Lemmers, Frank van Bel, Martin Wolf, Sabine Van Huffel
Journal of Biomedical Optics, Vol. 17, Issue 11, 117003, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117003
Open Access
TOPICS: Near infrared spectroscopy, Signal processing, Blood pressure, Interference (communication), Lithium, Cerebral blood flow, Tissues, Tissue optics, Biological research, Biomedical optics
Natesh Parashurama, Thomas O'Sullivan, Adam de la Zerda, Pascale El Kallassi, Seongjae Cho, Hongguang Liu, Robert Teed, Hart Levy, Jarrett Rosenberg, Zhen Cheng, Ofer Levi, James Harris Jr., Sanjiv Gambhir
Journal of Biomedical Optics, Vol. 17, Issue 11, 117004, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117004
Open Access
TOPICS: Sensors, Tumors, Signal detection, Tissues, Biosensors, Vertical cavity surface emitting lasers, Luminescence, In vivo imaging, CCD cameras, In vitro testing
Yuriy Ushenko
Journal of Biomedical Optics, Vol. 17, Issue 11, 117005, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117005
Open Access
TOPICS: Blood, Plasma, Optical filters, Birefringence, Image filtering, Polarization, Crystals, Cancer, Fractal analysis, Biomedical optics
Thomas Rothe, Michael Schmitz, Alwin Kienle
Journal of Biomedical Optics, Vol. 17, Issue 11, 117006, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117006
Open Access
TOPICS: Light scattering, Scattering, Particles, Mie scattering, Optical spheres, Microscopy, Microscopes, Spectral resolution, Refractive index, Laser scattering
Ralph W. C. G. Wijshoff, Massimo Mischi, Jeroen Veen, Alexander Van Der Lee, Ronald Aarts
Journal of Biomedical Optics, Vol. 17, Issue 11, 117007, (November 2012) https://doi.org/10.1117/1.JBO.17.11.117007
Open Access
TOPICS: Sensors, Semiconductor lasers, Doppler effect, Motion measurement, Skin, Signal to noise ratio, Modulation, Tissue optics, Photodiodes, Speckle
Research Papers: Therapeutic
Journal of Biomedical Optics, Vol. 17, Issue 11, 118001, (November 2012) https://doi.org/10.1117/1.JBO.17.11.118001
Open Access
TOPICS: Tissue optics, Uterus, Tissues, Laser coagulation, Optical components, Diffusers, In vivo imaging, Laser tissue interaction, Natural surfaces, Prototyping
Jose Archilla, Maria Moreira, Sueli Miyagi, Antonio Bombana, Norbert Gutknecht, Márcia Marques D.D.S.
Journal of Biomedical Optics, Vol. 17, Issue 11, 118002, (November 2012) https://doi.org/10.1117/1.JBO.17.11.118002
Open Access
TOPICS: Nd:YAG lasers, Control systems, Teeth, Calcium, Bacteria, Tissues, Microorganisms, In vitro testing, Semiconductor lasers, Erbium lasers
Errata
David Abookasis, Elad Zafrir, Elimelech Nesher, Albert Pinhasov, Shmuel Sternklar, Marlon Mathews M.D.
Journal of Biomedical Optics, Vol. 17, Issue 11, 119801, (November 2012) https://doi.org/10.1117/1.JBO.17.11.119801
Open Access
TOPICS: Reflectance spectroscopy, Mouse models, Biomedical optics, Electronics engineering, Molecular biology, Surgery
Yuriy Ushenko
Journal of Biomedical Optics, Vol. 17, Issue 11, 119802, (November 2012) https://doi.org/10.1117/1.JBO.17.11.119802
Open Access
TOPICS: Optical filters, Image filtering, Blood, Plasma, Biomedical optics
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