Prof. Wiro J. Niessen Profile

Prof. Wiro J. Niessen

at Erasmus MC

SPIE Involvement:

Author

Publications (44)

Proceedings Article | 4 April 2022 Paper

Evaluation of marker tracking using mono and stereo vision in Microsoft HoloLens for surgical navigation

Abdullah Thabit, Wiro Niessen, Eppo Wolvius, Theo van Walsum

Proceedings Volume 12034, 1203415 (2022) https://doi.org/10.1117/12.2607262

KEYWORDS: Cameras, Optical tracking, Surgery, Navigation systems, 3D modeling, Stereoscopic cameras, Error analysis, Augmented reality, Accuracy assessment

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Proceedings Article | 15 February 2021 Presentation + Paper

Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI

Bo Li, Wiro Niessen, Stefan Klein, M. Arfan Ikram, Meike Vernooij, Esther Bron

Proceedings Volume 11596, 115960L (2021) https://doi.org/10.1117/12.2580928

KEYWORDS: Image segmentation, Diffusion magnetic resonance imaging, Image registration, Optimization (mathematics), Neuroimaging, Magnetic resonance imaging, Brain, Biological research

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Proceedings Article | 16 March 2020 Presentation + Paper

Transformation optimization and image blending for 3D liver ultrasound series stitching

Yuanyuan Sun, Taygun Kekec, Adriaan Moelker, Wiro Niessen, Theo van Walsum

Proceedings Volume 11315, 1131512 (2020) https://doi.org/10.1117/12.2551439

KEYWORDS: Image registration, Ultrasonography, Image quality, Panoramic photography, Liver, Error analysis, Data acquisition, 3D image processing, Image blending

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Proceedings Article | 2 March 2020 Presentation + Paper

PIM: A visualization-oriented web application for monitoring and debugging of large-scale image processing studies

Thomas Kroes, Hakim Achterberg, Marcel Koek, Adriaan Versteeg, Wiro Niessen, Aad van der Lugt, Peter van het Hof, Baldur van Lew, Boudewijn Lelieveldt

Proceedings Volume 11318, 1131808 (2020) https://doi.org/10.1117/12.2541540

KEYWORDS: Image processing, Visualization, Inspection, Optical inspection, Visual analytics, Optical tracking, Failure analysis, Image visualization, Zoom lenses, Biomedical optics

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Proceedings Article | 2 March 2018 Presentation + Paper

Classification of malignant and benign liver tumors using a radiomics approach

Martijn P. Starmans, Razvan Miclea, Sebastian van der Voort, Wiro Niessen, Maarten Thomeer, Stefan Klein

Proceedings Volume 10574, 105741D (2018) https://doi.org/10.1117/12.2293609

KEYWORDS: Tumors, Liver, Magnetic resonance imaging, Image segmentation, Feature selection, Feature extraction, Performance modeling, Biopsy, Image registration

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Proceedings Article | 24 February 2017 Paper

Laplacian eigenmaps for multimodal groupwise image registration

Mathias Polfliet, Stefan Klein, Wiro Niessen, Jef Vandemeulebroucke

Proceedings Volume 10133, 101331N (2017) https://doi.org/10.1117/12.2248719

KEYWORDS: Image registration, Magnetic resonance imaging, Image processing, Principal component analysis, Arteries, Brain, Dimension reduction, Diffusion, Positron emission tomography, Radiology

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Proceedings Article | 29 March 2016 Paper

Modeling the brain morphology distribution in the general aging population

W. Huizinga, D. H. Poot, G. Roshchupkin, E. Bron, M. Ikram, M. Vernooij, D. Rueckert, W. Niessen, S. Klein

Proceedings Volume 9788, 97880I (2016) https://doi.org/10.1117/12.2207228

KEYWORDS: Brain, Neuroimaging, Image registration, Visualization, Statistical analysis, Magnetic resonance imaging, Alzheimer's disease, Visual analytics, Radiology, Image analysis

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Proceedings Article | 21 March 2014 Paper

Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

Jean-Marie Guyader, Livia Bernardin, Naomi H. Douglas, Dirk H. Poot, Wiro Niessen, Stefan Klein

Proceedings Volume 9034, 90340O (2014) https://doi.org/10.1117/12.2043174

KEYWORDS: Image registration, Diffusion, Abdomen, Image restoration, Visualization, Diffusion magnetic resonance imaging, 3D image processing, Image quality, Liver, 3D acquisition

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Proceedings Article | 21 March 2014 Paper

Nonrigid motion compensation in B-mode and contrast enhanced ultrasound image sequences of the carotid artery

Diego D. Carvalho, Zeynettin Akkus, Johan Bosch, Stijn C. van den Oord, Wiro Niessen, Stefan Klein

Proceedings Volume 9034, 90340N (2014) https://doi.org/10.1117/12.2043549

KEYWORDS: Ultrasonography, Arteries, Image enhancement, Motion estimation, Image contrast enhancement, Visualization, Image visualization, Image registration, Image resolution, Rigid registration

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Proceedings Article | 21 March 2014 Paper

Wavelet based free-form deformations for nonrigid registration

Wei Sun, Wiro Niessen, Stefan Klein

Proceedings Volume 9034, 90343N (2014) https://doi.org/10.1117/12.2043846

KEYWORDS: Wavelets, Image registration, Lung, Brain, Visual process modeling, Medical imaging, Magnetic resonance imaging, Electroluminescent displays, Data modeling, Neuroimaging

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Proceedings Article | 13 March 2013 Paper

Bias correction of maximum likelihood estimation in quantitative MRI

D. H. Poot, G. Kotek, W. Niessen, S. Klein

Proceedings Volume 8669, 86691F (2013) https://doi.org/10.1117/12.2006407

KEYWORDS: Magnetic resonance imaging, Stereolithography, Diffusion tensor imaging, Monte Carlo methods, Silicon, Radiology, Statistical analysis, Tissues, Anisotropy, Time metrology

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Proceedings Article | 13 March 2013 Paper

Robust local appearance features for MRI brain structure segmentation across scanning protocols

Hakim Achterberg, Dirk H. J. Poot, Fedde van der Lijn, Meike Vernooij, M. Arfan Ikram, Wiro Niessen, Marleen de Bruijne

Proceedings Volume 8669, 866905 (2013) https://doi.org/10.1117/12.2006038

KEYWORDS: Image segmentation, Tissues, Brain, Data modeling, Scanners, Magnetic resonance imaging, Neuroimaging, Brain mapping, Data acquisition, Target acquisition

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Proceedings Article | 24 February 2012 Paper

Super-resolution reconstruction in MRI: better images faster?

Esben Plenge, Dirk H. Poot, Monique Bernsen, Gyula Kotek, Gavin Houston, Piotr Wielopolski, Louise van der Weerd, Wiro Niessen, Erik Meijering

Proceedings Volume 8314, 83143V (2012) https://doi.org/10.1117/12.911235

KEYWORDS: Signal to noise ratio, Magnetic resonance imaging, Image resolution, Lawrencium, Super resolution, Image processing, Computer programming, Radiology, Scanners, Transform theory

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Proceedings Article | 24 February 2012 Paper

Intracranial aneurysm growth quantification in CTA

Azadeh Firouzian, Rashindra Manniesing, Coert Metz, Stefan Klein, Birgitta Velthuis, Gabriel J. Rinkel, Aad van der Lugt, Wiro Niessen

Proceedings Volume 8314, 831448 (2012) https://doi.org/10.1117/12.910713

KEYWORDS: Image segmentation, Rigid registration, Radiology, Image registration, 3D image processing, Arteries, 3D scanning, Spherical lenses, Optical spheres, Neck

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Proceedings Article | 15 March 2011 Paper

Region based level set segmentation of the outer wall of the carotid bifurcation in CTA

D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, A. van der Lugt, W. Niessen

Proceedings Volume 7962, 79623P (2011) https://doi.org/10.1117/12.878114

KEYWORDS: Image segmentation, Arteries, Image classification, Calcium, Tissues, Magnetic resonance imaging, 3D modeling, 3D image processing, Signal attenuation, Health informatics

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Proceedings Article | 12 March 2011 Paper

Multispectral MRI centerline tracking in carotid arteries

Hui Tang, Theo van Walsum, Robbert van Onkelen, Stefan Klein, Reinhard Hameeteman, Michiel Schaap, Quirijn J. van den Bouwhuijsen, Jacqueline C. Witteman, Aad van der Lugt, Lucas van Vliet, Wiro Niessen

Proceedings Volume 7962, 79621N (2011) https://doi.org/10.1117/12.877817

KEYWORDS: Arteries, Magnetic resonance imaging, Image processing, Image registration, Detection and tracking algorithms, Algorithm development, Blood, Phase contrast, Denoising, Image processing algorithms and systems

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Proceedings Article | 9 March 2011 Paper

Developing a tool for the validation of quantitative DCE-MRI

Karin Bol, Joost Haeck, Lejla Alic, Monique Bernsen, Marion de Jong, Wiro Niessen, Jifke Veenland

Proceedings Volume 7965, 79651J (2011) https://doi.org/10.1117/12.877834

KEYWORDS: Tumors, Magnetic resonance imaging, In vivo imaging, Image registration, 3D image processing, Temporal resolution, Tissues, Image segmentation, 3D modeling, 3D image enhancement

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Proceedings Article | 9 March 2011 Paper

Plaque characterization in ex vivo MRI evaluated by dense 3D correspondence with histology

Arna van Engelen, Marleen de Bruijne, Stefan Klein, Hence Verhagen, Harald Groen, Jolanda Wentzel, Aad van der Lugt, Wiro Niessen

Proceedings Volume 7963, 796329 (2011) https://doi.org/10.1117/12.878007

KEYWORDS: Magnetic resonance imaging, Tissues, Image segmentation, Image registration, Tissue optics, In vivo imaging, 3D image processing, Image classification, Arteries, Rigid registration

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Proceedings Article | 2 March 2011 Paper

A patient-specific visualization tool for comprehensive analysis of coronary CTA and perfusion MRI data

H. Kirisli, V. Gupta, S. Kirschbaum, L. Neefjes, R. J. van Geuns, N. Mollet, B. Lelieveldt, J. H. C. Reiber, T. van Walsum, W. J. Niessen

Proceedings Volume 7964, 796410 (2011) https://doi.org/10.1117/12.873050

KEYWORDS: Arteries, Visualization, Cardiovascular magnetic resonance imaging, 3D modeling, Image segmentation, Magnetic resonance imaging, Heart, Visual analytics, Angiography, Eye

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Proceedings Article | 13 March 2010 Paper

Fully automatic cardiac segmentation from 3D CTA data: a multi-atlas based approach

Hortense Kirisli, Michiel Schaap, Stefan Klein, Lisan Neefjes, Annick Weustink, Theo Van Walsum, Wiro Niessen

Proceedings Volume 7623, 762305 (2010) https://doi.org/10.1117/12.838370

KEYWORDS: Image segmentation, Heart, Image registration, Arteries, Computed tomography, Computer aided diagnosis and therapy, Magnetic resonance imaging, Visualization, Angiography, Image quality standards

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Proceedings Article | 13 March 2010 Paper

Intracranial aneurysm segmentation in 3D CT angiography: method and quantitative validation

Azadeh Firouzian, R. Manniesing, Z. Flach, R. Risselada, F. van Kooten, M. C. J. M. Sturkenboom, A. van der Lugt, W. Niessen

Proceedings Volume 7623, 76233M (2010) https://doi.org/10.1117/12.843674

KEYWORDS: Image segmentation, Arteries, Angiography, Brain, Computed tomography, Bone, Statistical analysis, Binary data, Image analysis, Diagnostics

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Proceedings Article | 13 March 2010 Paper

Correspondence free 3D statistical shape model fitting to sparse x-ray projections

N. Baka, W. Niessen, B. Kaptein, T. van Walsum, L. Ferrarini, J. H. Reiber, B. P. Lelieveldt

Proceedings Volume 7623, 76230D (2010) https://doi.org/10.1117/12.840935

KEYWORDS: 3D modeling, X-rays, 3D image processing, Statistical modeling, Image segmentation, Data modeling, X-ray imaging, Computer programming, 3D image reconstruction, Reconstruction algorithms

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Proceedings Article | 9 March 2010 Paper

Multi-modal image registration: matching MRI with histology

Lejla Alic, Joost Haeck, Stefan Klein, Karin Bol, Sandra van Tiel, Piotr Wielopolski, Magda Bijster, Wiro Niessen, Monique Bernsen, Jifke Veenland, Marion de Jong

Proceedings Volume 7626, 762603 (2010) https://doi.org/10.1117/12.844123

KEYWORDS: Magnetic resonance imaging, Image registration, Tumors, In vivo imaging, Tissues, Image processing, 3D image processing, Image segmentation, Image restoration, Visualization

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Proceedings Article | 26 March 2008 Paper

Volume preserving image registration via a post-processing stage

Reinhard Hameeteman, Jifke Veenland, Wiro Niessen

Proceedings Volume 6914, 69140Y (2008) https://doi.org/10.1117/12.770646

KEYWORDS: Image registration, Medical imaging, Liver, Signal to noise ratio, Fluid dynamics, Fourier transforms, 3D image processing, Image visualization, Optical tracking, Visualization

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Proceedings Article | 11 March 2008 Paper

AdaBoost classification for model-based segmentation of the outer wall of the common carotid artery in CTA

D. Vukadinovic, T. van Walsum, R. Manniesing, A. van der Lugt, T. de Weert, W. Niessen

Proceedings Volume 6914, 691418 (2008) https://doi.org/10.1117/12.770232

KEYWORDS: Image segmentation, Arteries, Calcium, Data modeling, 3D modeling, Magnetic resonance imaging, Image classification, Machine learning, Image processing, Error analysis

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Proceedings Article | 26 March 2007 Paper

Automated localization of periventricular and subcortical white matter lesions

Fedde van der Lijn, Meike Vernooij, M. Arfan Ikram, Henri Vrooman, Daniel Rueckert, Alexander Hammers, Monique Breteler, Wiro Niessen

Proceedings Volume 6512, 651232 (2007) https://doi.org/10.1117/12.710532

KEYWORDS: Image segmentation, Magnetic resonance imaging, Tissues, Brain, Neuroimaging, Electronic filtering, Image registration, Image processing algorithms and systems, Detection and tracking algorithms, Surgery

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Proceedings Article | 3 March 2007 Paper

Automatic segmentation of the internal carotid arteries through the skull base

Rashindra Manniesing, Wiro Niessen

Proceedings Volume 6512, 65120I (2007) https://doi.org/10.1117/12.705201

KEYWORDS: Skull, Image segmentation, Arteries, Bone, Independent component analysis, Computed tomography, Angiography, Hough transforms, Radiology, Profiling

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Proceedings Article | 15 March 2006 Paper

kNN-based multi-spectral MRI brain tissue classification: manual training versus automated atlas-based training

Henri Vrooman, Chris Cocosco, Rik Stokking, M. Arfan Ikram, Meike Vernooij, Monique Breteler, Wiro Niessen

Proceedings Volume 6144, 61443L (2006) https://doi.org/10.1117/12.650522

KEYWORDS: Tissues, Brain, Image segmentation, Magnetic resonance imaging, Electronic filtering, Image processing, Neuroimaging, Image classification, Brain mapping, Data acquisition

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Conventional k-Nearest-Neighbor (kNN) classification, which has been successfully applied to classify brain tissue, requires laborious training on manually labeled subjects. In this work, the performance of kNN-based segmentation of gray matter (GM), white matter (WM) and cerebrospinal fluid (CSF) using manual training is compared with a new method, in which training is automated using an atlas. From 12 subjects, standard T2 and PD scans and a high-resolution, high-contrast scan (Siemens T1-weighted HASTE sequence with reverse contrast) were used as feature sets. For the conventional kNN method, manual segmentations were used for training, and classifications were evaluated in a leave-one-out study. The performance as a function of the number of samples per tissue, and k was studied. For fully automated training, scans were registered to a probabilistic brain atlas. Initial training samples were randomly selected per tissue based on a threshold on the tissue probability. These initials were processed to keep the most reliable samples. Performance of the method for varying the threshold on the tissue probability method was studied. By measuring the percentage overlap (SI), classification results of both methods were validated. For conventional kNN classification, varying the number of training samples did not result in significant differences, while increasing k gave significantly better results. In the method using automated training, there is an overestimation of GM at the expense of CSF at higher thresholds on the tissue probability maps. The difference between the conventional method (k=45) and the observers was not significantly larger than inter-observer variability for all tissue types. The automated method performed slightly worse and performed equal to the observers for WM, and less for CSF and GM. From these results it can be concluded that conventional kNN classification may replace manual segmentation, and that atlas-based kNN segmentation has strong potential for fully automated segmentation, without the need of laborious manual training.

Proceedings Article | 10 March 2006 Paper

Automatic cardiac MRI myocardium segmentation using graphcut

Gunnar Kedenburg, Chris Cocosco, Ullrich Köthe, Wiro Niessen, Evert-jan Vonken, Max Viergever

Proceedings Volume 6144, 61440A (2006) https://doi.org/10.1117/12.653583

KEYWORDS: Image segmentation, Fuzzy logic, Cardiovascular magnetic resonance imaging, Tissues, Magnetic resonance imaging, Lung, Blood, Statistical modeling, Heart, Data acquisition

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Proceedings Article | 16 September 2005 Paper

Automatic image-driven segmentation of cardiac ventricles in cine anatomical MRI

Chris Cocosco, Wiro Niessen, Thomas Netsch, Evert-jan Vonken, Max Viergever

Proceedings Volume 5909, 59091M (2005) https://doi.org/10.1117/12.625575

KEYWORDS: Image segmentation, Magnetic resonance imaging, Heart, Medical imaging, Visualization, Image processing algorithms and systems, Image quality, Data centers, Binary data, Inspection

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Proceedings Article | 12 May 2004 Paper

Semi-automatic segmentation and quantification of the internal carotid artery from 3D contrast-enhanced MR angiograms

Cornelis van Bemmel, Wiro Niessen

Proceedings Volume 5370, (2004) https://doi.org/10.1117/12.534407

KEYWORDS: Independent component analysis, Arteries, Image segmentation, Angiography, 3D image processing, Visualization, Medical imaging, Statistical analysis, Interfaces, Inspection

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Proceedings Article | 12 May 2004 Paper

Skeletonization for reinitialization in level-set-based vascular tree segmentation

Rashindra Manniesing, Birgitta Velthuis, Maarten van Leeuwen, Wiro Niessen

Proceedings Volume 5370, (2004) https://doi.org/10.1117/12.533045

KEYWORDS: Image segmentation, Bone, Arteries, Image processing, Computed tomography, Tissues, Image registration, 3D image processing, Cerebral aneurysms, Visualization

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Proceedings Article | 12 May 2004 Paper

3D coronary reconstruction from calibrated motion-compensated 2D projections based on semi-automated feature point detection

Babak Movassaghi, Volker Rasche, Max Viergever, Wiro Niessen

Proceedings Volume 5370, (2004) https://doi.org/10.1117/12.535271

KEYWORDS: Heart, 3D image processing, 3D modeling, 3D image reconstruction, Calibration, Motion models, 3D acquisition, Angiography, Animal model studies, Data modeling

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Proceedings Article | 12 May 2004 Paper

Accurate coronary modeling procedure using 2D calibrated projections based on 2D centerline points on a single projection

Babak Movassaghi, Volker Rasche, Max Viergever, Wiro Niessen

Proceedings Volume 5370, (2004) https://doi.org/10.1117/12.535328

KEYWORDS: 3D modeling, Calibration, 3D image processing, Arteries, Data acquisition, Angiography, Data modeling, Image segmentation, X-rays, Systems modeling

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Proceedings Article | 5 May 2004 Paper

3D guide wire tracking for navigation in endovascular interventions

Shirley Baert, Theo van Walsum, Wiro Niessen

Proceedings Volume 5367, (2004) https://doi.org/10.1117/12.533995

KEYWORDS: 3D image processing, Image segmentation, 3D modeling, Visualization, 3D image reconstruction, 3D displays, Arteries, Optical tracking, Angiography, Sensors

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Proceedings Article | 30 May 2003 Paper

Three-dimensional guide wire visualization from 3DRA using monoplane fluoroscopic imaging

Theo van Walsum, Shirley Baert, Wiro Niessen

Proceedings Volume 5029, (2003) https://doi.org/10.1117/12.480207

KEYWORDS: 3D image processing, Image visualization, Visualization, 3D image reconstruction, 3D modeling, Image segmentation, Optical tracking, Image filtering, 3D visualizations, X-ray imaging

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Proceedings Article | 15 May 2003 Paper

Noninvasive MR to 3D rotational x-ray registration of vertebral bodies

Everine van de Kraats, Theo van Walsum, Jorrit-Jan Verlaan, Wiro Niessen

Proceedings Volume 5032, (2003) https://doi.org/10.1117/12.487226

KEYWORDS: Image registration, Magnetic resonance imaging, Image resolution, Image segmentation, 3D image processing, X-rays, Surgery, Brain-machine interfaces, 3D acquisition, Medical imaging

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Proceedings Article | 15 May 2003 Paper

Coupled deformable models with spatially varying features for quantitative assessment of left ventricular function from cardiac MRI

Kirsten Meetz, Jens von Berg, Thomas Netsch, Vladimir Pekar, Steven Lobregt, Roel Truyen, Miriam Siers, Wiro Niessen, Michael Kaus

Proceedings Volume 5032, (2003) https://doi.org/10.1117/12.481352

KEYWORDS: Image segmentation, Data modeling, 3D modeling, Magnetic resonance imaging, Cardiovascular magnetic resonance imaging, Natural surfaces, Statistical modeling, Medical imaging, Eye models, Binary data

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Proceedings Article | 15 May 2003 Paper

Model-based segmentation of abdominal aortic aneurysms in CTA images

Marleen de Bruijne, Bram van Ginneken, Wiro Niessen, Marco Loog, Max Viergever

Proceedings Volume 5032, (2003) https://doi.org/10.1117/12.481367

KEYWORDS: Image segmentation, 3D modeling, Data modeling, Statistical modeling, Mahalanobis distance, Shape analysis, Statistical analysis, Image resolution, Surgery, Performance modeling

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Proceedings Article | 9 May 2002 Paper

Active-shape-model-based segmentation of abdominal aortic aneurysms in CTA images

Marleen de Bruijne, Bram van Ginneken, Wiro Niessen, J. B. Antoine Maintz, Max Viergever

Proceedings Volume 4684, (2002) https://doi.org/10.1117/12.467188

KEYWORDS: Image segmentation, 3D modeling, Data modeling, Tissues, Statistical modeling, Modeling, Solids, Image resolution, Performance modeling, Computed tomography

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Proceedings Article | 9 May 2002 Paper

Blood pool agent contrast-enhanced MRA: level-set-based artery-vein separation

Cornelis van Bemmel, Luuk Spreeuwers, Bert Verdonck, Max Viergever, Wiro Niessen

Proceedings Volume 4684, (2002) https://doi.org/10.1117/12.467112

KEYWORDS: Arteries, Veins, Image segmentation, Image filtering, Blood, Imaging systems, Gaussian filters, Visualization, Image resolution, Data acquisition

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Proceedings Article | 3 July 2001 Paper

Semiautomatic aortic endograft localization for postoperative evaluation of endovascular aneurysm treatment

Marleen de Bruijne, Wiro Niessen, J. B. Antoine Maintz, Max Viergever

Proceedings Volume 4322, (2001) https://doi.org/10.1117/12.431111

KEYWORDS: Image segmentation, Computer programming, Surgery, Medical imaging, Arteries, Shape analysis, Navigation systems, Metals, Visualization, 3D image processing

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Proceedings Article | 3 July 2001 Paper

Objective and reproducible segmentation and quantification of tuberous sclerosis lesions in FLAIR brain MR images

Tanja Alderliesten, Wiro Niessen, Koen Vincken, J. B. Antoine Maintz, Floor Jansen, Onno van Nieuwenhuizen, Max Viergever

Proceedings Volume 4322, (2001) https://doi.org/10.1117/12.431033

KEYWORDS: Image segmentation, Brain, Neuroimaging, Fuzzy logic, Tissues, Expectation maximization algorithms, Magnetic resonance imaging, Binary data, Image registration, Scanners

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Proceedings Article | 12 May 1995 Paper

Spatiotemporal analysis of left ventricular motion

Wiro Niessen, James Duncan, Bart ter Haar Romeny, Max Viergever

Proceedings Volume 2434, (1995) https://doi.org/10.1117/12.208696

KEYWORDS: Heart, Motion analysis, Fourier transforms, 3D modeling, Temporal resolution, Magnetic resonance imaging, Motion models, Convolution, Space operations, Heat treatments

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