Prof. Jan Egger Profile

Prof. Jan Egger

at Universitätsklinikum Essen

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Author

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Personal Website | Company Website

Publications (26)

Proceedings Article | 10 April 2023 Poster + Paper

A web-based radiomics module for image feature extraction for tumor characterization

Theresa Huebner, Aaron Berger, Daniel Wild, Jianning Li, Antonio Pepe, Christina Gsaxner, Yuan Jin, Gijs Luijten, Jens Kleesiek, Jan Egger

Proceedings Volume 12469, 124690W (2023) https://doi.org/10.1117/12.2663100

KEYWORDS: Radiomics, Feature extraction, Image segmentation, Tumors, Medical imaging, Data modeling, Medicine, Image analysis, Artificial intelligence, Magnetic resonance imaging

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Proceedings Article | 10 April 2023 Poster + Paper

Multicenter aortic vessel tree extraction using deep learning

Bernhard Scharinger, Antonio Pepe, Yuan Jin, Christina Gsaxner, Jianning Li, Jan Egger

Proceedings Volume 12468, 124681F (2023) https://doi.org/10.1117/12.2656936

KEYWORDS: Image segmentation, Aorta, Tunable filters, Education and training, Deep learning, Convolution, Aneurysms, Voxels, Neural networks, Medicine

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Proceedings Article | 4 April 2022 Poster + Paper

Geometric modeling of aortic dissections through convolution surfaces

Luana Petrelli, Antonio Pepe, Antonella Disanto, Christina Gsaxner, Jianning Li, Yuan Jin, Domenico Buongiorno, Antonio Brunetti, Vitoantonio Bevilacqua, Jan Egger

Proceedings Volume 12037, 120370V (2022) https://doi.org/10.1117/12.2628187

KEYWORDS: Convolution, Image segmentation, Genetic algorithms, Aorta, Visualization, 3D modeling, Medicine, Linear filtering, Natural surfaces, Matrices

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Proceedings Article | 4 April 2022 Poster + Paper

Bringing any medical 3D scan onto augmented reality hardware: a streamlined data pipeline

Paul Ganster, Maximilian Weber, Daniel Wild, Christina Gsaxner, Natalie Schellnegger, Jan Egger

Proceedings Volume 12037, 120370P (2022) https://doi.org/10.1117/12.2612563

KEYWORDS: Augmented reality, Visualization, 3D scanning, 3D displays, Image segmentation, 3D image processing, Medicine, Medical imaging, Data conversion, Computed tomography

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Proceedings Article | 4 April 2022 Poster + Paper

Enhancement of aortic dissections in CT angiography: are common filters robust enough?

Antonella Disanto, Antonio Pepe, Luana Petrelli, Christina Gsaxner, Jianning Li, Yuan Jin, Antonio Brunetti, Domenico Buongiorno, Jan Egger, Vitoantonio Bevilacqua

Proceedings Volume 12036, 120362B (2022) https://doi.org/10.1117/12.2628186

KEYWORDS: Image filtering, Image segmentation, Aorta, Image enhancement, Binary data, Image processing algorithms and systems, Angiography, Arteries, Pathology, Medicine

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Proceedings Article | 15 February 2021 Presentation + Paper

A patch-based-approach for aortic landmarking

Michael Schmied, Antonio Pepe, Jan Egger

Proceedings Volume 11600, 1160010 (2021) https://doi.org/10.1117/12.2580718

KEYWORDS: Angiography, Computed tomography, Image classification, Convolutional neural networks, Aorta

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Proceedings Article | 15 February 2021 Poster + Presentation + Paper

A cloud-based centerline algorithm for Studierfenster

Christina Dionysio, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Luis Alvarez, Jan Egger

Proceedings Volume 11601, 1160115 (2021) https://doi.org/10.1117/12.2588268

KEYWORDS: Aorta, Shape analysis, Medical imaging, Computed tomography, Blood vessels, Aneurysms

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Proceedings Article | 15 February 2021 Poster + Presentation + Paper

An online platform for automatic skull defect restoration and cranial implant design

Jianning Li, Antonio Pepe, Christina Gsaxner, Jan Egger

Proceedings Volume 11598, 115981Q (2021) https://doi.org/10.1117/12.2580719

KEYWORDS: Skull, System integration, Surgery, 3D modeling, Medical imaging applications, Medical imaging, Manufacturing, Imaging systems, Image processing, 3D printing

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Proceedings Article | 15 February 2021 Poster + Presentation + Paper

Deep learning and particle filter-based aortic dissection vessel tree segmentation

Yuan Jin, Antonio Pepe, Jianning Li, Christina Gsaxner, Jan Egger

Proceedings Volume 11600, 116001W (2021) https://doi.org/10.1117/12.2588220

KEYWORDS: Particle filters, Image segmentation, Aorta, Particles, Computed tomography, Pathology, Injuries, Detection and tracking algorithms, Angiography

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Proceedings Article | 15 February 2021 Presentation + Paper

A web client-based online DICOM browser and NRRD converter for Studierfenster

Christopher Ramirez Bedoya, Daniel Wild, Antonio Pepe, Christina Gsaxner, Jianning Li, Jan Egger

Proceedings Volume 11601, 116010P (2021) https://doi.org/10.1117/12.2580716

KEYWORDS: Data conversion, Data communications, Raster graphics, Medicine, Medical imaging, Image processing, Digital imaging, Computer architecture, 3D image processing

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Proceedings Article | 16 March 2020 Paper

A comprehensive workflow and framework for immersive virtual endoscopy of dissected aortae from CTA data

Jan Egger, Simon Gunacker, Antonio Pepe, Gian Marco Melito, Christina Gsaxner, Jianning Li, Katrin Ellermann, Xiaojun Chen

Proceedings Volume 11315, 1131531 (2020) https://doi.org/10.1117/12.2559239

KEYWORDS: Virtual reality, Visualization, Blood, Aorta, Computed tomography, 3D modeling, Medicine, Endoscopy, Blood circulation, Medical research

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Proceedings Article | 28 February 2020 Presentation + Paper

IRIS: interactive real-time feedback image segmentation with deep learning

Antonio Pepe, Richard Schussnig, Jianning Li, Christina Gsaxner, Xiaojun Chen, Thomas-Peter Fries, Jan Egger

Proceedings Volume 11317, 113170R (2020) https://doi.org/10.1117/12.2551354

KEYWORDS: Image segmentation, Aorta, 3D displays, 3D vision, IRIS Consortium, Pathology, Visualization, Arteries, Computed tomography, 3D image processing

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Proceedings Article | 12 March 2018 Paper

Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans

Christina Gsaxner, Birgit Pfarrkirchner, Lydia Lindner, Norbert Jakse, Jürgen Wallner, Dieter Schmalstieg, Jan Egger

Proceedings Volume 10578, 105781Z (2018) https://doi.org/10.1117/12.2292706

KEYWORDS: Image segmentation, Positron emission tomography, Bladder, Computed tomography, Binary data, Medical imaging, Image processing algorithms and systems, Neural networks, Databases, Visualization

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Proceedings Article | 12 March 2018 Paper

Lower jawbone data generation for deep learning tools under MeVisLab

Birgit Pfarrkirchner, Christina Gsaxner, Lydia Lindner, Norbert Jakse, Jürgen Wallner, Dieter Schmalstieg, Jan Egger

Proceedings Volume 10578, 105782O (2018) https://doi.org/10.1117/12.2292708

KEYWORDS: Image segmentation, Computed tomography, Neural networks, Medical imaging, Surgery, X-ray computed tomography, Image processing, 3D modeling, Binary data, Medicine

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Proceedings Article | 6 March 2018 Paper

Multi-threaded integration of HTC-Vive and MeVisLab

Simon Gunacker, Markus Gall, Dieter Schmalstieg, Jan Egger

Proceedings Volume 10579, 105791H (2018) https://doi.org/10.1117/12.2292718

KEYWORDS: Virtual reality, Visualization, Medical imaging, Image segmentation, Surgery, Head-mounted displays, 3D image processing, Computing systems, Magnetic resonance imaging, Pathology

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Proceedings Article | 6 March 2018 Paper

TuMore: generation of synthetic brain tumor MRI data for deep learning based segmentation approaches

Lydia Lindner, Birgit Pfarrkirchner, Christina Gsaxner, Dieter Schmalstieg, Jan Egger

Proceedings Volume 10579, 105791C (2018) https://doi.org/10.1117/12.2315704

KEYWORDS: Tumors, Magnetic resonance imaging, Brain, Neuroimaging, Image segmentation, Medical imaging, Medicine, Image processing, Neural networks, Data modeling

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Proceedings Article | 13 March 2017 Paper

Integration of the HTC Vive into the medical platform MeVisLab

Jan Egger, Markus Gall, Jürgen Wallner, Pedro de Almeida Germano Boechat, Alexander Hann, Xing Li, Xiaojun Chen, Dieter Schmalstieg

Proceedings Volume 10138, 1013817 (2017) https://doi.org/10.1117/12.2263234

KEYWORDS: Virtual reality, Visualization, Head-mounted displays, Surgery, Image processing, Medical research, 3D vision, 3D image processing, Head, Medical imaging

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Proceedings Article | 13 March 2017 Presentation + Paper

Algorithmic evaluation of lower jawbone segmentations

Jan Egger, Kerstin Hochegger, Markus Gall, Xiaojun Chen, Knut Reinbacher, Katja Schwenzer-Zimmerer, Dieter Schmalstieg, Jürgen Wallner

Proceedings Volume 10137, 101370C (2017) https://doi.org/10.1117/12.2249532

KEYWORDS: Image segmentation, Bone, Medical imaging, Surgery, 3D modeling, 3D visualizations, Gold, Reconstruction algorithms, Visualization, Computed tomography

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Proceedings Article | 3 March 2017 Paper

Interactive planning of miniplates

Markus Gall, Knut Reinbacher, Jürgen Wallner, Jan Stanzel, Xiaojun Chen, Katja Schwenzer-Zimmerer, Dieter Schmalstieg, Jan Egger

Proceedings Volume 10135, 101352M (2017) https://doi.org/10.1117/12.2249748

KEYWORDS: Surgery, 3D modeling, Computed tomography, Visualization, Solid modeling, Bone, 3D printing, Titanium, Tissues, Medical imaging

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SPIE Journal Paper | 20 June 2016

Iterative-cuts: longitudinal and scale-invariant segmentation via user-defined templates for rectosigmoid colon in gynecological brachytherapy

Tobias Lüddemann, Jan Egger

JMI, Vol. 3, Issue 02, 024004, (June 2016) https://doi.org/10.1117/12.10.1117/1.JMI.3.2.024004

KEYWORDS: Image segmentation, Colon, Bladder, Image processing algorithms and systems, Magnetic resonance imaging, Tumors, Algorithm development, 3D image processing, Cancer, Rectum

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Proceedings Article | 6 April 2016 Paper

Cellular automata segmentation of the boundary between the compacta of vertebral bodies and surrounding structures

Jan Egger, Christopher Nimsky

Proceedings Volume 9787, 97871G (2016) https://doi.org/10.1117/12.2209039

KEYWORDS: Image segmentation, Magnetic resonance imaging, Medical imaging, Time metrology, Image analysis, 3D image processing, Image processing algorithms and systems, Surgery, Bone, Spine, 3D vision

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Proceedings Article | 1 April 2016 Paper

US-Cut: interactive algorithm for rapid detection and segmentation of liver tumors in ultrasound acquisitions

Jan Egger, Philip Voglreiter, Mark Dokter, Michael Hofmann, Xiaojun Chen, Wolfram Zoller, Dieter Schmalstieg, Alexander Hann

Proceedings Volume 9790, 97901C (2016) https://doi.org/10.1117/12.2216509

KEYWORDS: Image segmentation, Liver, Ultrasonography, Detection and tracking algorithms, Image quality, Tissues, Algorithm development, Cancer, Liver cancer, Image processing algorithms and systems, Tumors, Computed tomography

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Proceedings Article | 21 March 2016 Paper

Interactive and scale invariant segmentation of the rectum/sigmoid via user-defined templates

Tobias Lüddemann, Jan Egger

Proceedings Volume 9784, 978436 (2016) https://doi.org/10.1117/12.2216226

KEYWORDS: Image segmentation, Cancer, Colon, Tissues, Rectum, Shape analysis, Image analysis, Tumors, Surface plasmons, Cervical cancer, Image processing algorithms and systems, Magnetic resonance imaging

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Proceedings Article | 9 March 2011 Paper

Preoperative volume determination for pituitary adenoma

Dženan Zukic, Jan Egger, Miriam H. Bauer, Daniela Kuhnt, Barbara Carl, Bernd Freisleben, Andreas Kolb, Christopher Nimsky

Proceedings Volume 7963, 79632T (2011) https://doi.org/10.1117/12.877660

KEYWORDS: Image segmentation, Tumors, Magnetic resonance imaging, Surgery, 3D modeling, Algorithm development, Receptors, Therapeutics, Brain, Optical spheres

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Proceedings Article | 17 March 2008 Paper

Detection and visualization of endoleaks in CT data for monitoring of thoracic and abdominal aortic aneurysm stents

J. Lu, J. Egger, A. Wimmer, S. Großkopf, B. Freisleben

Proceedings Volume 6918, 69181F (2008) https://doi.org/10.1117/12.769414

KEYWORDS: Image segmentation, 3D modeling, Visualization, 3D image processing, Opacity, Image visualization, Computed tomography, Visual process modeling, Metals, Binary data

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Proceedings Article | 22 March 2007 Paper

Simulation of bifurcated stent grafts to treat abdominal aortic aneurysms (AAA)

J. Egger, S. Großkopf, B. Freisleben

Proceedings Volume 6509, 65091N (2007) https://doi.org/10.1117/12.709260

KEYWORDS: Arteries, Visualization, Surgery, Computed tomography, Neck, Image segmentation, Blood circulation, Image processing, Computer simulations, Mathematics

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Showing 5 of 26 publications

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