Presentation + Paper
20 May 2022 Machine learning for white matter fibre tract visualization in the human brain via Mueller matrix polarimetric data
Richard McKinley, Leonard A. Felger, Ekkehard Hewer, Theoni Maragkou, Michael Murek, Tatiana Novikova, Omar Rodríguez-Núñez, Angelo Pierangelo, Philippe Schucht
Author Affiliations +
Abstract
A clear identification of the border between a brain tumor and surrounding healthy tissue during neurosurgery is essential in order to maximize tumor resection while preserving neurological function. However, tumor tissue is often difficult to differentiate from infiltrated brain during surgery. Most existing techniques have drawbacks in terms of cost, measurement time and accuracy. The fibre tracts of healthy brain white matter are composed of densely packed bundles of myelinated axons that form uniaxial linear birefringent medium with the optical axis oriented along the direction of the fibre bundle. Brain tumors, whose cells grow in a largely chaotic way, lack this anisotropy of refractive index. Therefore tumor tissue can be distinguished from of healthy white matter using polarized light. A wide-field visible wavelength imaging Mueller polarimetric system was used for the study of formalin-fixed human brain sections measured in reflection geometry. The non-linear decomposition of the Mueller matrices provided the maps of depolarization, scalar retardance and azimuth of the optical axis. A compelling correlation between the azimuth of the optical axis and the orientation of the brain fibre tracts was proven with the gold standard histology analysis. We present the results of post-processing of Mueller polarimetric images of fixed human brain sections using a combination of classical computer vision and machine learning algorithms, for the automated brain fibre tracking in the white matter tracts. Manually labelled polarimetric data was used to train a convolutional neural network to identify white matter. Within the identified white matter, surface fibre tracts could be visualized. We expect that Mueller polarimetric imaging modality combined with our ML algorithms for fibre tracking will visualize the directions of fibre tracts in imaging plane during tumor surgery, thus, allowing a neurosurgeon to orient himself, to spare essential fibre tracts and to make surgery more complete and safe.
Conference Presentation
© (2022) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Richard McKinley, Leonard A. Felger, Ekkehard Hewer, Theoni Maragkou, Michael Murek, Tatiana Novikova, Omar Rodríguez-Núñez, Angelo Pierangelo, and Philippe Schucht "Machine learning for white matter fibre tract visualization in the human brain via Mueller matrix polarimetric data", Proc. SPIE 12136, Unconventional Optical Imaging III, 121360G (20 May 2022); https://doi.org/10.1117/12.2624465
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KEYWORDS
Brain

Polarimetry

Neuroimaging

Tissues

Tumors

Image segmentation

Machine learning

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