Dr. Emily A. Gibson Profile

Dr. Emily A. Gibson

Associate Professor at Univ of Colorado Anschutz Medical Campus

SPIE Involvement:

Author

Publications (17)

SPIE Journal Paper | 30 September 2024 Open Access

Special Section Guest Editorial: Open-source neurophotonic tools for neuroscience

Suhasa Kodandaramaiah, Daniel Aharoni, Emily Gibson

NPh, Vol. 11, Issue 03, 034301, (September 2024) https://doi.org/10.1117/12.10.1117/1.NPh.11.3.034301

KEYWORDS: Neuroscience, Neurophotonics, Imaging systems, Biological imaging, Miniaturization, Animals, Open source software, Microscopes, Fluorescence, Data analysis

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SPIE Journal Paper | 12 June 2024 Open Access

OpenSTED: open-source dynamic intensity minimum system for stimulated emission depletion microscopy

Stephanie A. Pierce, Jordan Jacobelli, Katherine S. Given, Wendy B. Macklin, Juliet T. Gopinath, Mark E. Siemens, Diego Restrepo, Emily A. Gibson

NPh, Vol. 11, Issue 03, 034311, (June 2024) https://doi.org/10.1117/12.10.1117/1.NPh.11.3.034311

KEYWORDS: Stimulated emission depletion microscopy, Biological samples, Photobleaching, Field programmable gate arrays, Photons, Fluorescence, Microscopes, Biological imaging, Control systems, Dynamical systems

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SPIE Journal Paper | 1 December 2022 Open Access

GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals

Connor McCullough, Daniel Ramirez-Gordillo, Michael Hall, Gregory Futia, Andrew Moran, Emily Gibson, Diego Restrepo

NPh, Vol. 9, Issue 04, 045009, (December 2022) https://doi.org/10.1117/12.10.1117/1.NPh.9.4.045009

KEYWORDS: GRIN lenses, Imaging systems, Electrodes, Two photon imaging, Animals, Neurons, In vivo imaging, Electrophysiology, Coherence imaging, Neurophotonics

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SPIE Journal Paper | 28 April 2022 Open Access

Characterization of red fluorescent reporters for dual-color in vivo three-photon microscopy

Michael A. Thornton, Gregory Futia, Michael Stockton, Baris Ozbay, Karl Kilborn, Diego Restrepo, Emily Gibson, Ethan Hughes

NPh, Vol. 9, Issue 03, 031912, (April 2022) https://doi.org/10.1117/12.10.1117/1.NPh.9.3.031912

KEYWORDS: In vivo imaging, Microscopy, Brain, Signal detection, Neuroimaging, Neurophotonics, Microscopes, Absorption, Neurons, Prisms

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Proceedings Article | 4 March 2019 Presentation

Statistical multivariate analysis of biomarkers for circulating tumor cell detection (Conference Presentation)

Gregory Futia, Isabel Schlaepfer, Lubna Qamar, Kian Behbakht, Emily Gibson

Proceedings Volume 10889, 108890A (2019) https://doi.org/10.1117/12.2514487

KEYWORDS: Tumors, Biological research, Statistical analysis, Confocal microscopy, Systems modeling, Feature extraction, Feature selection

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Proceedings Article | 22 February 2019 Presentation + Paper

In vivo holographic photo-stimulation and two photon GCaMP6 imaging of vagus nerve axons using a GRIN lens integrated nerve cuff

Gregory Futia, Arjun Fontaine, Samuel Littich, Connor McCullough, Diego Restrepo, Richard Weir, John Caldwell, Emily Gibson

Proceedings Volume 10866, 108660K (2019) https://doi.org/10.1117/12.2521830

KEYWORDS: Nerve, Axons, Two photon imaging, Holography, GRIN lenses, In vivo imaging, Calcium, Heart, Spatial light modulators, Objectives, Infrared radiation, Ultrafast phenomena

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Proceedings Article | 14 March 2018 Presentation

Three-dimensional multiphoton imaging of brain activity in freely-moving mice using a miniature microscope with variable focus lens (Conference Presentation)

Emily Gibson, Baris Ozbay, Gregory Futia, Ming Ma, Ethan Hughes, Diego Restrepo

Proceedings Volume 10499, 104991K (2018) https://doi.org/10.1117/12.2309388

KEYWORDS: 3D image processing, Microscopes, Neuroimaging, Brain, Two photon imaging, Head, Neurons, Green fluorescent protein, Luminescence, Tissues

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Proceedings Article | 23 February 2018 Presentation + Paper

Measurement of wavefront aberrations in cortex and peripheral nerve using a two-photon excitation guidestar

Gregory Futia, Arjun Fontaine, Connor McCullough, Baris Ozbay, Nickolas George, John Caldwell, Diego Restrepo, Richard Weir, Emily Gibson

Proceedings Volume 10502, 105020J (2018) https://doi.org/10.1117/12.2309492

KEYWORDS: Nerve, Wavefronts, Interfaces, Sensors, Scattering, Wavefront aberrations, Two photon imaging, Adaptive optics, Microscopes, Luminescence

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Proceedings Article | 13 February 2018 Paper

Deep-tissue two-photon imaging in brain and peripheral nerve with a compact high-pulse energy ytterbium fiber laser

Arjun Fontaine, Matthew Kirchner, John Caldwell, Richard Weir, Emily Gibson

Proceedings Volume 10492, 1049217 (2018) https://doi.org/10.1117/12.2309490

KEYWORDS: Nerve, Brain, Tissues, Neuroimaging, Fiber lasers, Pulsed laser operation, Axons, Ytterbium, Tissue optics, Scattering

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SPIE Journal Paper | 28 June 2016 Open Access

Super-resolution imaging of ciliary microdomains in isolated olfactory sensory neurons using a custom two-color stimulated emission depletion microscope

Stephanie Meyer, Baris Ozbay, Mariana Potcoava, Ernesto Salcedo, Diego Restrepo, Emily Gibson

JBO, Vol. 21, Issue 06, 066017, (June 2016) https://doi.org/10.1117/12.10.1117/1.JBO.21.6.066017

KEYWORDS: Stimulated emission depletion microscopy, Microscopes, Proteins, Sensors, Neurons, Confocal microscopy, Super resolution, Luminescence, Calcium, Microscopy

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Proceedings Article | 6 April 2016 Presentation + Paper

Quantitative image cytometry measurements of lipids, DNA, CD45 and cytokeratin for circulating tumor cell identification in a model system

Gregory Futia, Lubna Qamar, Kian Behbakht, Emily Gibson

Proceedings Volume 9711, 97111U (2016) https://doi.org/10.1117/12.2222317

KEYWORDS: Feature extraction, Blood, Cancer, Tumors, Image segmentation, Microscopy, Spatial frequencies, Image processing, Head, Software development

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SPIE Journal Paper | 16 June 2014 Open Access

Raman and coherent anti-Stokes Raman scattering microscopy studies of changes in lipid content and composition in hormone-treated breast and prostate cancer cells

Mariana Potcoava, Gregory Futia, Jessica Aughenbaugh, Isabel Schlaepfer, Emily Gibson

JBO, Vol. 19, Issue 11, 111605, (June 2014) https://doi.org/10.1117/12.10.1117/1.JBO.19.11.111605

KEYWORDS: Raman spectroscopy, Cancer, Microscopy, CARS tomography, Prostate cancer, Breast, Oncology, Principal component analysis, Microscopes, Photons

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Proceedings Article | 4 March 2014 Paper

Super-resolution imaging of ciliary microdomains in isolated olfactory sensory neurons using a custom STED microscope

Stephanie Meyer, Baris Ozbay, Diego Restrepo, Emily Gibson

Proceedings Volume 8950, 89500W (2014) https://doi.org/10.1117/12.2041784

KEYWORDS: Stimulated emission depletion microscopy, Microscopes, Confocal microscopy, Sensors, Proteins, Microscopy, Neurons, Super resolution, Imaging systems, Beam splitters

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Proceedings Article | 4 March 2014 Paper

Micro-Raman spectroscopy studies of changes in lipid composition in breast and prostate cancer cells treated with MPA and R1881 hormones

Mariana Potcoava, Gregory Futia, Jessica Aughenbaugh, Isabel Schlaepfer, Emily Gibson

Proceedings Volume 8939, 89390I (2014) https://doi.org/10.1117/12.2040696

KEYWORDS: Raman spectroscopy, Cancer, Prostate cancer, Principal component analysis, Breast, Breast cancer, Micro raman spectroscopy, Analytical research, Proteins, Prostate

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Proceedings Article | 26 March 2013 Paper

Multiphoton gonioscopy to image the trabecular meshwork of porcine eyes

Omid Masihzadeh, David Ammar, Malik Kahook, Emily Gibson, Tim Lei

Proceedings Volume 8567, 85671E (2013) https://doi.org/10.1117/12.2003031

KEYWORDS: Eye, Tissues, Adaptive optics, Second-harmonic generation, Collagen, Tissue optics, Image resolution, Microscopes, Cornea, Optical coherence tomography

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SPIE Journal Paper | 20 March 2013 Open Access

Direct trabecular meshwork imaging in porcine eyes through multiphoton gonioscopy

Omid Masihzadeh, David Ammar, Malik Kahook, Emily Gibson, Tim Lei

JBO, Vol. 18, Issue 03, 036009, (March 2013) https://doi.org/10.1117/12.10.1117/1.JBO.18.3.036009

KEYWORDS: Eye, Adaptive optics, Tissues, Second-harmonic generation, Sclera, Scattering, Image resolution, Collagen, Laser scattering, Mirrors

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Proceedings Article | 17 March 2005 Paper

Ultrashort-pulse EUV and soft x-ray sources based on high-harmonic generation: principles and applications

Ra'anan Tobey, Daisy Raymondson, Emily Gibson, Chi-Fong Lei, Ariel Paul, Sterling Backus, Mark Siemens, Xiaoshi Zhang, Margaret Murnane, Henry Kapteyn

Proceedings Volume 5580, (2005) https://doi.org/10.1117/12.579521

KEYWORDS: Extreme ultraviolet, Imaging spectroscopy, Waveguides, Oxygen, Acoustics, Signal processing, Modulation, High harmonic generation, Frequency conversion, Ionization

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Showing 5 of 17 publications

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