Dr. Mohammad Abbas Yaseen Profile

Dr. Mohammad Abbas Yaseen

Assistant Professor at Northeastern Univ

SPIE Involvement:

Conference Program Committee | Author

Publications (27)

Proceedings Article | 13 March 2024 Presentation + Paper

Injection-permeable cannula for longitudinal in vivo subcortical two-photon microscopy in rodent brains

Zhengyi Lu, Priya Shah, Alfredo Cardenas-Rivera, Chang Liu, Mohammad A. Yaseen

Proceedings Volume 12828, 1282808 (2024) https://doi.org/10.1117/12.3003209

KEYWORDS: Tissues, Brain, Plastics, In vivo imaging, Windows, GRIN lenses, Brain tissue, Oxygen, Two photon excitation microscopy, Polyimides

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Proceedings Article | 13 March 2024 Poster + Paper

Physical activity mitigates dysfunction of the neuro-vascular unit in a mouse model of Alzheimer’s disease

Alfredo Cardenas-Rivera, Eda Erdogmus, Austin Birmingham, Jaime Anton-Arnal, Nazila Loghmani, Chang Liu, Zhengyi Lu, Yuntao Li, Mohammad Yaseen

Proceedings Volume 12828, 128280C (2024) https://doi.org/10.1117/12.3002796

KEYWORDS: Neurovascular coupling, Oxygen, Alzheimer disease, Brain, Phosphorescence, Capillaries

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SPIE Journal Paper | 21 July 2023 Open Access

Cortical microvascular blood flow velocity mapping by combining dynamic light scattering optical coherence tomography and two-photon microscopy

Qi Pian, Mohammed Alfadhel, Jianbo Tang, Grace V. Lee, Baoqiang Li, Buyin Fu, Yagmur Ayata, Mohammad Abbas Yaseen, David A. Boas, Timothy W. Secomb, Sava Sakadzic

JBO, Vol. 28, Issue 07, 076003, (July 2023) https://doi.org/10.1117/12.10.1117/1.JBO.28.7.076003

KEYWORDS: Angiography, Optical coherence tomography, Capillaries, Blood circulation, Image segmentation, Brain, Biological imaging, Data acquisition, Voxels, Velocity measurements

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SignificanceThe accurate large-scale mapping of cerebral microvascular blood flow velocity is crucial for a better understanding of cerebral blood flow (CBF) regulation. Although optical imaging techniques enable both high-resolution microvascular angiography and fast absolute CBF velocity measurements in the mouse cortex, they usually require different imaging techniques with independent system configurations to maximize their performances. Consequently, it is still a challenge to accurately combine functional and morphological measurements to co-register CBF speed distribution from hundreds of microvessels with high-resolution microvascular angiograms.AimWe propose a data acquisition and processing framework to co-register a large set of microvascular blood flow velocity measurements from dynamic light scattering optical coherence tomography (DLS-OCT) with the corresponding microvascular angiogram obtained using two-photon microscopy (2PM).ApproachWe used DLS-OCT to first rapidly acquire a large set of microvascular velocities through a sealed cranial window in mice and then to acquire high-resolution microvascular angiograms using 2PM. The acquired data were processed in three steps: (i) 2PM angiogram coregistration with the DLS-OCT angiogram, (ii) 2PM angiogram segmentation and graphing, and (iii) mapping of the CBF velocities to the graph representation of the 2PM angiogram.ResultsWe implemented the developed framework on the three datasets acquired from the mice cortices to facilitate the coregistration of the large sets of DLS-OCT flow velocity measurements with 2PM angiograms. We retrieved the distributions of red blood cell velocities in arterioles, venules, and capillaries as a function of the branching order from precapillary arterioles and postcapillary venules from more than 1000 microvascular segments.ConclusionsThe proposed framework may serve as a useful tool for quantitative analysis of large microvascular datasets obtained by OCT and 2PM in studies involving normal brain functioning, progression of various diseases, and numerical modeling of the oxygen advection and diffusion in the realistic microvascular networks.

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Proceedings Article | 25 April 2023 Poster + Paper

LPS-induced inflammation alters cerebral oxygenation but not blood flow in a mouse model of Alzheimer’s disease

Chang Liu, Mohammed Alfadhel, Shayna Teitelbaum, Austin Birmingham, Alfredo Cardenas-Rivera, Mohammed Yaseen

Proceedings Volume 12384, 123840L (2023) https://doi.org/10.1117/12.2647187

KEYWORDS: Capillaries, Brain, Oxygen, Inflammation, Red blood cells, Oxygenation, Phosphorescence, Blood circulation, Alzheimer disease, Photons

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Proceedings Article | 15 March 2023 Poster + Paper

Custom cannula for in vivo subcortical two-photon microscopy in mouse models of Alzheimer’s disease

Zhengyi Lu, Gregory Cross, Yu-Chieh Yuan, Alfredo Cardenas-Rivera, Chang Liu, Mohammad Yaseen

Proceedings Volume 12365, 123650D (2023) https://doi.org/10.1117/12.2650164

KEYWORDS: GRIN lenses, Two photon excitation microscopy, In vivo imaging, Mouse models, Brain, Alzheimer disease, Windows, Neuroimaging

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Proceedings Article | 5 March 2021 Presentation + Paper

Quantitation of cerebral oxygen tension using phasor analysis and phosphorescent lifetime imaging microscopy (PLIM)

Amanda Chisholm, Chang Liu, Buyin Fu, Clover Su, İkbal Şencan, Sava Sakadžić, Mohammad Yaseen

Proceedings Volume 11648, 116480C (2021) https://doi.org/10.1117/12.2578920

KEYWORDS: Phosphorescence, Oxygen, Microscopy, Luminescence, Fluorescence lifetime imaging, Visualization, Mode conditioning cables, Fourier transforms

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Proceedings Article | 5 March 2021 Poster

Two-photon microscopic imaging of the circadian rhythm induced changes in the cerebral microvascular blood flow

Baoqiang Li, Ikbal Sencan, Ji Leng, Ryo Ohtomo, Hajime Takase, Jason Porter, Qi Pian, Martin Thunemann, Stephen Adams, Jing Yang, Buyin Fu, Mohammad Yaseen, Chongzhao Ran, David Boas, Anna Devor, Ken Arai, Cenk Ayata, Eng Lo, Sava Sakadžic

Proceedings Volume 11629, 116292O (2021) https://doi.org/10.1117/12.2579395

KEYWORDS: Blood circulation, Two photon imaging, Capillaries, Neuroprotection, Ischemia, Cranial windows, Cerebral blood flow, Brain

Proceedings Article | 5 March 2021 Presentation

Two-photon phosphorescence lifetime microscopy of intestinal capillary pO2 and RBC flux

Ikbal Sencan, Wenjing Zong, Mohammed Alfadhel, Buyin Fu, Mohammad Yaseen, Gary Wu, Sava Sakadzic, Sergei Vinogradov

Proceedings Volume 11648, 116480H (2021) https://doi.org/10.1117/12.2583123

KEYWORDS: Capillaries, Phosphorescence, Microscopy, Oxygen, Intestine, Hyperoxia, Body temperature, Tissues, Natural surfaces, Glasses

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SPIE Journal Paper | 27 December 2018 Open Access

Cerebral metabolism in a mouse model of Alzheimer’s disease characterized by two-photon fluorescence lifetime microscopy of intrinsic NADH

Carlos A. Gómez, Buyin Fu, Sava Sakadžic, Mohammad A. Yaseen

NPh, Vol. 5, Issue 04, 045008, (December 2018) https://doi.org/10.1117/12.10.1117/1.NPh.5.4.045008

KEYWORDS: Luminescence, Mode conditioning cables, Mouse models, Alzheimer's disease, Fluorescence lifetime imaging, Microscopy, In vivo imaging, Tissues, Pathology, Animal model studies

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SPIE Journal Paper | 4 December 2018 Open Access

Two-photon phosphorescence lifetime microscopy of retinal capillary plexus oxygenation in mice

Ikbal Sencan, Tatiana V. Esipova, Mohammad A. Yaseen, Buyin Fu, David A. Boas, Sergei A. Vinogradov, Mahnaz Shahidi, Sava Sakadžic

JBO, Vol. 23, Issue 12, 126501, (December 2018) https://doi.org/10.1117/12.10.1117/1.JBO.23.12.126501

KEYWORDS: Phosphorescence, Eye, Oxygen, Capillaries, Retina, Objectives, Arteries, Calibration, Veins, Hyperoxia

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Proceedings Article | 14 March 2018 Presentation

Cerebral oxygenation and blood flow distributions along the capillary path in awake mice (Conference Presentation)

Baoqiang Li, Ikbal Sencan, Tatiana Esipova, Kivilcim Kilic, Mohammad Moeini, Mohammad Yaseen, Buyin Fu, Sreekanth Kura, Frédéric Lesage, Sergei Vinogradov, Anna Devor, David Boas, Sava Sakadžić

Proceedings Volume 10481, 1048109 (2018) https://doi.org/10.1117/12.2290858

KEYWORDS: Capillaries, Oxygen, Blood circulation, Two photon excitation microscopy, Phosphorescence, Tissues, Two photon imaging, Blood, Cranial windows, Angiography

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Proceedings Article | 19 April 2017 Presentation

Measurement of cortical functional activation in awake mice using two-photon microscopy and a novel pO2-sensitive probe (Conference Presentation)

Ikbal Sencan, Tatiana Esipova, Kivilcim Kilic, Baoqiang Li, Michèle Desjardins, Mohammad Yaseen, Hui Wang, Rajeshwer Jaswal, Sreekanth Kura, Buyin Fu, David Boas, Anna Devor, Sava Sakadžić, Sergei Vinogradov

Proceedings Volume 10051, 100510S (2017) https://doi.org/10.1117/12.2255035

KEYWORDS: Biomedical optics, Cerebral blood flow, Two photon excitation microscopy, Two photon imaging, Oxygen, Blood circulation, Coherence imaging, Physiology, Optical coherence tomography, Optical imaging

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Proceedings Article | 19 April 2017 Presentation

Two-photon microscopy measurement of CMRO2 using periarteriolar PO2 gradients (Conference Presentation)

Sava Sakadžić, Mohammad Yaseen, Rajeshwer Jaswal, Emmanuel Roussakis, Anders Dale, Richard Buxton, Sergei Vinogradov, David Boas, Anna Devor

Proceedings Volume 10051, 100510Q (2017) https://doi.org/10.1117/12.2253690

KEYWORDS: Functional magnetic resonance imaging, Multimodal imaging, Mathematical modeling, Oxygen, Tissues, Two photon excitation microscopy, Brain, Pathophysiology, Blood, Alzheimer's disease

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Proceedings Article | 19 April 2017 Presentation

Alterations in cerebral metabolism observed in living rodents using fluorescence lifetime microscopy of intrinsic NADH (Conference Presentation)

Mohammad Yaseen, Sava Sakadžić, Jason Sutin, Weicheng Wu, Buyin Fu, David Boas

Proceedings Volume 10050, 100500R (2017) https://doi.org/10.1117/12.2253967

KEYWORDS: Mode conditioning cables, Fluorescence lifetime imaging, Luminescence, Microscopy, Data modeling, Brain, In vivo imaging, Single photon, Multimodal imaging, Imaging systems

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SPIE Journal Paper | 17 October 2016 Open Access

Two-photon microscopy measurement of cerebral metabolic rate of oxygen using periarteriolar oxygen concentration gradients

Sava Sakadžić, Mohammad Yaseen, Rajeshwer Jaswal, Emmanuel Roussakis, Anders Dale, Richard Buxton, Sergei Vinogradov, David Boas, Anna Devor

NPh, Vol. 3, Issue 04, 045005, (October 2016) https://doi.org/10.1117/12.10.1117/1.NPh.3.4.045005

KEYWORDS: Tissues, Oxygen, Two photon excitation microscopy, Blood, Brain, Diffusion, Phosphorescence, Natural surfaces, Capillaries, Blood circulation

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Proceedings Article | 26 April 2016 Presentation

Ultra-high resolution polarization-sensitive optical coherence microscopy for brain imaging at 6 um, 3.4 um and 1.3 um resolution (Conference Presentation)

Hui Wang, Taner Akkin, Caroline Magnain, Mohammad Yaseen, Avilash Cramer, Ruopeng Wang, Sava Sakadžic, David Boas

Proceedings Volume 9690, 96901C (2016) https://doi.org/10.1117/12.2212696

KEYWORDS: Image resolution, Brain, Optical resolution, Brain imaging, Neuroimaging, Optical coherence microscopy, Tissue optics, Microscopes, Reflectivity, Biomedical optics

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Proceedings Article | 26 April 2016 Presentation

High-spatial-resolution mapping of the oxygen concentration in cortical tissue (Conference Presentation)

Rajeshwer Jaswal, Mohammad Yaseen, Buyin Fu, David Boas, Sava Sakadžic

Proceedings Volume 9690, 96901G (2016) https://doi.org/10.1117/12.2212716

KEYWORDS: Tissues, Oxygen, Brain mapping, Capillaries, Biomedical optics, Brain activation, Cerebral blood flow, Microscopy, Cranial windows, Mouse models

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SPIE Journal Paper | 12 March 2015 Open Access

Multimodal reconstruction of microvascular-flow distributions using combined two-photon microscopy and Doppler optical coherence tomography

Louis Gagnon, Sava Sakadžić, Fréderic Lesage, Emiri Mandeville, Qianqian Fang, Mohammad Yaseen, David Boas

NPh, Vol. 2, Issue 01, 015008, (March 2015) https://doi.org/10.1117/12.10.1117/1.NPh.2.1.015008

KEYWORDS: Capillaries, Optical coherence tomography, Angiography, Two photon excitation microscopy, Blood circulation, Resistance, Doppler tomography, Velocity measurements, Blood, Blood pressure

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Proceedings Article | 3 March 2010 Paper

Optically based quantification of absolute cerebral metabolic rate of oxygen (CMRO2) with high spatial resolution in rodents

Mohammad Yaseen, Vivek Srinivasan, Sava Sakadžić, Sergei Vinogradov, David Boas

Proceedings Volume 7548, 75483R (2010) https://doi.org/10.1117/12.842904

KEYWORDS: Oxygen, Blood circulation, Optical coherence tomography, Angiography, Spatial resolution, Brain, Confocal microscopy, Hypoxia, Imaging systems, Tissues

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SPIE Journal Paper | 1 March 2010 Open Access

Optoacoustic imaging of the prostate: development toward image-guided biopsy

Mohammad Yaseen, Sergey Ermilov, Hans-Peter Brecht, Richard Su, André Conjusteau, Matthew Fronheiser, Brent Bell, Massoud Motamedi, Alexander Oraevsky

JBO, Vol. 15, Issue 02, 021310, (March 2010) https://doi.org/10.1117/12.10.1117/1.3333548

KEYWORDS: Prostate, Tissues, Acoustics, Tissue optics, Signal detection, Biopsy, In vivo imaging, Imaging systems, Tumors, Signal processing

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Proceedings Article | 28 February 2008 Paper

Hybrid optoacoustic and ultrasonic imaging system for detection of prostate malignancies

Mohammad Yaseen, H. P.-F. Brecht, Sergey Ermilov, Reda Gharieb, Andre Conjusteau, Alexander Oraevsky

Proceedings Volume 6856, 68560T (2008) https://doi.org/10.1117/12.769881

KEYWORDS: Prostate, Tissues, Tumors, Signal detection, Ultrasonography, Transducers, Signal processing, Imaging systems, Ultrasonics, Absorption

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SPIE Journal Paper | 1 November 2007 Open Access

Stability assessment of indocyanine green within dextran-coated mesocapsules by absorbance spectroscopy

Mohammad Yaseen, Jie Yu, Michael Wong, Bahman Anvari

JBO, Vol. 12, Issue 06, 064031, (November 2007) https://doi.org/10.1117/12.10.1117/1.2821423

KEYWORDS: Absorbance, Molecules, Polymers, Indocyanine green, Molecular aggregates, Particles, Absorption spectroscopy, Spectroscopy, Molecular interactions, Tumors

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Proceedings Article | 13 February 2007 Paper

Encapsulation of indocyanine green within nano-assembled capsules changes its optical properties

Mohammad Yaseen, Jie Yu, Michael Wong, Bahman Anvari

Proceedings Volume 6449, 644908 (2007) https://doi.org/10.1117/12.707211

KEYWORDS: Absorbance, Molecules, Indocyanine green, Molecular aggregates, Polymers, Optical properties, Absorption, Particles, Near infrared, Tissue optics

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SPIE Journal Paper | 1 July 2006 Open Access

Comparative study of cryogen spray cooling with R-134a and R-404a: implications for laser treatment of dark human skin

Tianhong Dai, Mohammad Yaseen, Parmeswaran Diagaradjane, David Chang, Bahman Anvari

JBO, Vol. 11, Issue 04, 041116, (July 2006) https://doi.org/10.1117/12.10.1117/1.2338001

KEYWORDS: Skin, Cryogenics, Injuries, Blood vessels, Temperature metrology, Ear, Laser irradiation, Laser therapeutics, In vivo imaging, In vitro testing

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Cutaneous laser treatment in dark skin patients is challenging due to significant light absorption by the melanin at the basal layer of epidermis, which can result in irreversible nonspecific thermal injury to the epidermis. Cryogen spray cooling (CSC) with R-134a (boiling point –26.2°C at 1 atm), which is currently used during cutaneous laser treatment, has shown poor efficacy in protecting dark human skin. We investigated the potential of CSC with R-404a (boiling point –46.5°C at 1 atm), which has a lower boiling point than R-134a, for improved therapeutic outcome in dark human skin at three levels: in vitro (epoxy resin skin phantom), ex vivo (normal dark human skin sample), and in vivo (skin of the rabbit external ear). The skin phantom was used to acquire the surface and internal temperature profiles in response to CSC with R-134a or R-404a at various spurt durations, based upon which CSC-induced heat removal from the skin phantom was estimated using an algorithm that solved a one-dimensional inverse heat conduction problem. CSC with R-404a increased the temperature reductions within the phantom and subsequently the amount of heat removal from the phantom in comparison to that with R-134a. Normal ex vivo Fitzpatrick types V-VI human skin samples were used to investigate the thermal response of dark human skin epidermis to CSC (R-134a or R-404a) at various spurt durations in conjunction with 595-nm pulsed dye laser irradiation at various radiant exposures. Cryogen R-404a increased the threshold radiant exposures for irreversible thermal injury to the epidermis in dark pigmentation skin. No obvious CSC-induced morphological changes to human skin was observed when sprayed with R404-a spurts using durations up to 300 ms. In vivo rabbit ear vasculature was used as a model of cutaneous anomalies to assess the influences of CSC (with R-134a or R-404a) on the photothermolysis of dermal blood vessels. CSC (R-134a or R-404a) with the spurt durations of 100 to 300 ms increased the most superficial depth of ...

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SPIE Journal Paper | 1 January 2006 Open Access

Synchronous fluorescence spectroscopic characterization of DMBA-TPA-induced squamous cell carcinoma in mice

Parmeswaran Diagaradjane, Mohammad Yaseen, Jie Yu, Michael Wong, Bahman Anvari

JBO, Vol. 11, Issue 01, 014012, (January 2006) https://doi.org/10.1117/12.10.1117/1.2167933

KEYWORDS: Tissues, Tumors, Skin, Luminescence, Statistical analysis, Fluorescence spectroscopy, Spectroscopy, Collagen, Diagnostics, Biological research

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Proceedings Article | 25 April 2005 Paper

Autofluorescence characterization of DMBA-TPA-induced two-stage carcinogenesis in mouse skin for the early detection of tissue transformation

Parmeswaran Diagaradjane, Mohammed Yaseen, Jie Yu, Michael Wong, Bahman Anvari

Proceedings Volume 5686, (2005) https://doi.org/10.1117/12.589328

KEYWORDS: Tissues, Skin, Luminescence, Tumors, Statistical analysis, Collagen, Diagnostics, Tissue optics, Fluorescence spectroscopy, Cancer

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The use of autofluorescence technique in the characterization of the sequential tissue transformation process in 7,12-dimethylbenz(a)anthracene and 12-O-tetradecanoylphorbol-13-acetate (DMBA & TPA) induced two-stage mouse skin carcinogenesis model in conjunction with a suitable statistical method is being explored. The fluorescence excitation emission matrix (EEM) from experimental group (n=40; DMBA/TPA application), control group (n=6; acetone application) and the blank group (n=6; no application of DMBA/TPA or acetone) were measured every week using Fluoromax3 spectrofluorometer coupled with a waveguide fiber optic bundle (JY Horiba, NJ). The EEM was recorded for 19 excitation wavelengths from 280 to 460 nm at 10 nm intervals and the fluorescence emission was scanned from 300 to 750 nm. During the tissue transformation the epithelial tissues underwent biochemical and structural changes that are manifested in the tissue fluorescence. To correlate the tissue morphology with the observed fluorescence differences in the fluorescence emission, animals were sacrificed and the tissue biopsies were subjected to histopathological evaluation. The fluorescence emission corresponding to different fluorophores was extracted from the EEM, and the spectral data were used in multivariate statistical algorithm for the earliest diagnosis of the onset of tissue transformation. The intrinsic fluorescence from tryptophan, NADH and prophyrins showed distinct differences in the spectral signature during the tissue transformation, due to the altered metabolic activities of the cells. The statistical analysis of the spectral data corresponding to each excitation wavelength showed better classification accuracy at 280, 320, 350 and 405 nm excitations, corresponding to tryptophan, collagen, NADH and porphyrins with the classification accuracy of 74.3, 68.1, 64.6 and 74.7 % respectively. The variations in the spectral signature and the results of the statistical analysis suggest that porphyrins, tryptophan and NADH can be targeted as potential tumor markers in the early detection of the tissue transformation process.

Proceedings Article | 15 April 2005 Paper

Photothermal and photochemical effects of laser light absorption by indocyanine green (ICG)

Mohammad Yaseen, Parmeswaran Diagaradjane, Brian Pikkula, Jie Yu, Michael Wong, Bahman Anvari

Proceedings Volume 5695, (2005) https://doi.org/10.1117/12.589702

KEYWORDS: Photodynamic therapy, Blood vessels, Absorption, Ear, Tissues, Photothermal effect, Indocyanine green, Collagen, Chromophores, Pulsed laser operation

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Indocyanine Green (ICG) is clinically used as a fluorescent dye for imaging purposes. Its rapid circulation kinetics and minimal toxicity has prompted investigation into ICG's utility as a photosentitizer for therapeutic applications. Traditionally, optically mediated tumor therapy has focused on photodynamic therapy, which employs a photochemical mechanism resulting from the absorption of low intensity CW laser light by localized photosensitizers such as Photofrin II, Benzoporphyrin Derivative (BPD), ICG. Treatment of cutaneous vascular malformations such as port-wine stains, on the other hand, is based on a photothermal mechanism resulting from the absorption of high intensity pulsed laser light by hemoglobin. In this study, we compared the effectiveness of combining photochemical and photothermal mechanisms during application of ICG in conjunction with laser irradiation with the intention that the combined approach may lead to a reduction in the threshold dose of pulsed laser light required to treat hypervascular malformations. The blood vessels in rabbit ears were used as an in vivo model for targeted vasculature. Irradiation of the ears with IR light (λ=785 nm, Δτ = 3 min, I_o = 120 mW) was used to elicit photochemical damage, while photothermal damage was brought about using pulses from a ruby laser (λ=694 nm, τ = 3 ms) with different fluences. For the combined modality, photochemical damage was induced first and followed by photothermal irradiation. This modality was compared with photothermal irradiation alone. The effectiveness of each irradiation scheme was assessed using histopathological analysis. We present preliminary data that suggests that pretreatment with photodynamic therapy before photothermal coagulation results in more severe vascular damage with lower photothermal fluence levels. The results of this study provide the foundation work for further exploration of the therapeutic potentials of photochemical and photothermal effects during application of ICG in conjunction with laser irradiation.

Showing 5 of 27 publications

Conference Committee Involvement (3)

Neural Imaging and Sensing 2025

25 January 2025 | San Francisco, United States

Multimodal Biomedical Imaging XX

25 January 2025 | San Francisco, United States

Neural Imaging and Sensing 2024

27 January 2024 | San Francisco, California, United States

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